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Hi everybody</font>,<div><br></div><div><font size="3">I am installing Gromacs, in the shell it is said that Gromacs has been installed :</font></div><div><br></div><div><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;text-align:left;background-color:rgb(255, 255, 255)">GROMACS is installed under /home/Program/gromacs-4.5.</span></div><div><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;text-align:left;background-color:rgb(255, 255, 255)"><br></span></div><div><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;text-align:left;background-color:rgb(255, 255, 255)">but I couldn't find the directory bin under /gromacs-4.5, I don't know I have installed suc
cessfully or not, any one could help?</span></div><div><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;text-align:left;background-color:rgb(255, 255, 255)"><br></span></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">Here is the commands which I used to install Gromacs, my system is Ubuntu 11.10, gcc complier.</span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">There are some errors in config.log saying: gcc: fatal error no imput files. </span></
font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">I don't know if this matters or not, i tried to fix the fatal errors in log file, but I didn't get anywhere. </span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">In the last part of showing up in the shell it says something like this:</span></font></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊ
Ϊ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div style="text-align:left"><span style="color: rgb(68, 68, 68); font-family: ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif; font-size: 14px; line-height: 22px; background-color: rgb(255, 255, 255); "> /usr/bin/install -c -m 644 'xpm2ps.1' '/home/Program/gromacs-4.5/share/man/man1/xpm2ps_mpi.1'</span></div><div style="text-align:left"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"><br></span></div><div style="text-align:left"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">but I couldn't find man/man1 under </span><span style="background-color:rgb(255,
255, 255);color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px">/gromacs-4.5/share/, anyone could help?</span></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">installation commands:</span></font></div><div style="text-align:left"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">1) </span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> tar -zxvf fftw-3.3.1.tar.gz </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verd
ana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> tar ¨Czxvf gromacs-4.5.tar.gz </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> tar -zxvf lam-7.1.4.tar.gz </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)">
<span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">(2) </span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">cd lam-7.1.3 ./configure --pre</span><span class="ecxt_tag" style="word-wrap:break-word;cursor:pointer;border-bottom-width:1px;border-bottom-style:solid;border-bottom-color:rgb(255, 0, 0);white-space:nowrap;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)">fix</span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">=/home/Program/lam
-7.1.4 --with-rsh="ssh-x" </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> make </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> sudo make install </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f
\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">(3)</span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> export PATH=$PATH:/home/Program/lam-7.1.4/bin</span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:r
gb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">(4) </span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> cd fftw-3.3.1 </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> ./configure --enable-float --enable-mpi --prefix=/home/Program/fftw-3.3.1 </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:
\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> make </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> make install </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255
)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">(3)</span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> export CPPFLAGS=-I/home/Program/fftw-3.3.1/include </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> export LDFLAGS=-L/home/Program/fftw-3.3.1/lib </span><br style="word-wrap:break-word;color:rg
b(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">(4) </span><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)">cd gromacs-4.5 ./configure --prefix=/home/Program/gromacs-4.5 --enable-mpi --program-suffix=_mpi</span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-se
rif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> make </span><br style="word-wrap:break-word;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;background-color:rgb(255, 255, 255)"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"> sudo make install </span></div><div style="text-align:left"><span style="color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px;background-color:rgb(255, 255, 255)"><b>Here below are the last &nbs
p;part of output in the shell after I run "sudo make install"</b></span></div><div style="text-align:left"><span style="background-color:rgb(255, 255, 255)"><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"> /usr/bin/install -c -m 644 'trjorder.1' '/home/Program/gromacs-4.5/share/man/man1/trjorder_mpi.1'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"> /usr/bin/install -c -m 644 'xpm2ps.1' '/home/Program/gromacs-4.5/share/man/man1/xpm2ps_mpi.1'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man/man1'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-seri
f"><span style="font-size:14px;line-height:22px">make[2]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man/man1'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">Making install in man7</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Entering directory `/home/qunzi/Program/gromacs-4.5/man/man7'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Entering directory `/home/qunzi/Program/gromacs-4.5/man/man7'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Nothing to be done for `install-exec-am'.</span></font></div><div><font colo
r="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">test -z "/home/Program/gromacs-4.5/share/man/man7" || /bin/mkdir -p "/home/Program/gromacs-4.5/share/man/man7"</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"> /usr/bin/install -c -m 644 'gromacs.7' '/home/Program/gromacs-4.5/share/man/man7/gromacs_mpi.7'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man/man7'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man/man7'</span></font></div><div><font color="#444444" face
="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Entering directory `/home/qunzi/Program/gromacs-4.5/man'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Entering directory `/home/qunzi/Program/gromacs-4.5/man'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Nothing to be done for `install-exec-am'.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Nothing to be done for `install-data-am'.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Leaving directory `/h
ome/qunzi/Program/gromacs-4.5/man'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[1]: Leaving directory `/home/qunzi/Program/gromacs-4.5/man'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[1]: Entering directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Entering directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, H
elvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make install-exec-hook</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Entering directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">GROMACS is installed under /home/Program/gromacs-4.5.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">Make sure to update your PATH and MANPATH to find the</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica,
Arial, sans-serif"><span style="font-size:14px;line-height:22px">programs and unix manual pages, and possibly LD_LIBRARY_PATH</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">or /etc/ld.so.conf if you are using dynamic libraries.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">Please run "make tests" now to verify your installation.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><br></span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style=
"font-size:14px;line-height:22px">If you want links to the executables in /usr/local/bin,</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">you can issue "make links" now.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[3]: Leaving directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Nothing to be done for `install-data-am'.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[2]: Leaving directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verd
ana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make[1]: Leaving directory `/home/qunzi/Program/gromacs-4.5'</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ ls</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">acinclude.m4 AUTHORS config configure COPYING-GPU include Makefile man share</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">aclocal.m4 cmake config.log configure.ac Doxyfile
INSTALL-GPU Makefile.am README src</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">admin CMakeLists.txt config.status COPYING Doxyfile.in libtool Makefile.in scripts tests</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ echo $PATH</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">/opt/intel/bin:/opt/intel/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/Program/lam-7.1.4/bin</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma
, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ make tests</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make: `tests' is up to date.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ make tests</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">make: `tests' is up to date.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ man mdrun_mpi</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tah
oma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">No manual entry for mdrun_mpi</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">See 'man 7 undocumented' for help when manual pages are not available.</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ man mdrun_mpi.1</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">No manual entry for mdrun_mpi.1</span></font></div><div><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px">qunzi@qunzi-AO722:~/Program/gromacs-4.5$ </span></font></div><div style="font-weight
:bold;color:rgb(68, 68, 68);font-family:\005fae\008f6f\0096c5\009ed1, Tahoma, Verdana, Helvetica, Arial, sans-serif;font-size:14px;line-height:22px"><br></div></span></div><div style="text-align:left"><font color="#444444" face="ΞΆΘνΡΕΊΪ, Tahoma, Verdana, Helvetica, Arial, sans-serif"><span style="font-size:14px;line-height:22px"><b> </b></span></font></div> </div></div> </div></div> </div></div> </div></div> </div></body>
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