<br><br><div class="gmail_quote">On Thu, May 24, 2012 at 10:04 PM, Francesca <span dir="ltr"><<a href="mailto:francesca.stanzione@unina.it" target="_blank">francesca.stanzione@unina.it</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
I checked and the resul is the same...but now I know I can use -chainsep<br>
interactive!<br>
<br></blockquote><div><br>Yes, it works (-chainsep interactive: merge = no ) but when you process to grompp there is an error:<br><br>Unknown cmap torsion between atoms 6002 6004 6006 6017 6021<br><br>pdb2gmx takes the cmap for the atoms e.g. last two residues of chain A with first three residues of chain B. Does removing this lines will be reasonable or some torsions wont be taken into account?<br>
<br>Steven<br><br></div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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