<p>Hi Vijaya,</p>
<p>Just copy the CONECT records from the reference pdb afterwards.</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p><blockquote type="cite">On May 27, 2012 7:42 PM, "Justin A. Lemkul" <<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>> wrote:<br><br><p><font color="#500050">
On 5/27/12 1:36 PM, vijaya subramanian wrote:
</font></p><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi<p><font color="#500050">
> I don't have a .tpr file for the cg system. I am anlayzing results from pca and
> the trajectorie...</font></p></blockquote>
<br>
Not without your own custom force field. No Gromacs force field is compatible with CA-only models. There are a few scripts on the User Contribution site that may be useful.<font color="#888888"><br>
<br>
-Justin<br>
<br>
</font><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><p><font color="#500050">> > Date: Sun, 27 May 2012 12:12:14 -0400
> > From: <a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>
> > To: gmx-users@gromacs.org...</font></p><p><font color="#500050">> > On 5/27/12 12:05 PM, vijaya subramanian wrote:
> > >
> > > Hi
> > > I am trying to add conec...</font></p></blockquote><p><font color="#500050">
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Departmen...</font></p></blockquote></p>