<div>Hi Justin,</div><div> </div><div>Thank you for your quick reply. I tried to concatanete the trajectory files 4 times. Three out of four try, I got same error massage.</div><div>But it worked for the last one.. It is a weird situation.. What could cause this?</div>
<div> </div><div>Turgay<br><br></div><div class="gmail_quote">2012/6/1 Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>></span><br><blockquote style="margin:0px 0px 0px 0.8ex;padding-left:1ex;border-left-color:rgb(204,204,204);border-left-width:1px;border-left-style:solid" class="gmail_quote">
<div class="im"><br>
<br>
On 6/1/12 8:02 AM, Turgay Cakmak wrote:<br>
</div><blockquote style="margin:0px 0px 0px 0.8ex;padding-left:1ex;border-left-color:rgb(204,204,204);border-left-width:1px;border-left-style:solid" class="gmail_quote"><div class="im">
Hi gromacs users,<br>
I concatenated 7 trajectory files (each one has 10ns simulation) using<br>
"trajcat". Then, when I used "gmxcheck", I get following error.<br>
Reading frame 0 time 0.000<br>
# Atoms 68393<br>
Precision 0.001 (nm)<br>
Reading frame 13000 time 26000.000<br></div>
*WARNING: Incomplete frame: nr 13739 time 27478<div class="im"><br>
*<br>
But, when I check the non-concatenated files with gmxcheck, I didn't get any<br>
problem..<br>
I am so confused. Any suggestion will be really appreciated...<br>
</div></blockquote>
<br>
Try the concatenation again. Perhaps a filesystem blip caused an incomplete frame to be written.<br>
<br>
-Justin<span class="HOEnZb"><font color="#888888"><br>
<br>
-- <br>
==============================<u></u>==========<br>
<br>
Justin A. Lemkul, Ph.D.<br>
Research Scientist<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | <a href="tel:%28540%29%20231-9080" target="_blank" value="+15402319080">(540) 231-9080</a><br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
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</font></span></blockquote></div><br>