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On 11/06/2012 6:21 PM, Seera Suryanarayana wrote:
<blockquote
cite="mid:CAAr94NPXFzyH9Wst-F-v3qVPhnAZXp5jxLeERFgkJrCS77HeJQ@mail.gmail.com"
type="cite">Dear all gromacs users,<br>
While i am running the commond <font
size="3"><font face="Arial">"</font></font>mdrun -v -deffnm em"
iam getting the following error.<br>
<br>
<br>
Fatal error:<br>
Domain decomposition does
not support simple neighbor searching, use grid searching or
use particle decomposition. <br>
<br>
kindly tell me how to overcome.<br>
</blockquote>
<br>
As I said last time, "there is no substitute for reading about the
algorithms and .mdp options in the GROMACS manual". The above is an
easy issue to read about and resolve - if you can't or won't do
that, then you will face insurmountable barriers later. More, you
will have exhausted the patience of people who might help you,
because they have seen you make dozens of posts that make it easy to
suppose that you are not trying to do background reading in order to
learn enough to be able to solve your own problems.<br>
<br>
Mark<br>
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