Dear Justin sir,<br> I am simulating a protein 1AKI.pdb which is example of your tutorial.I am doing simulations as your tutorial.I didnt get any errors upto the commond "grompp -f minim.mdp -c 1AKI_solv_ions.gro -p topol.top -o em.tpr".After this as your tutorial i used the commond " mdrun -v -deffnm em", then i got the following error.<br>
<br> <font face="Arial"><font size="3">Fatal error:<br>Domain decomposition does not support simple neighbor searching, use grid searching or use particle decomposition<br><br>Kindly tell me how to overcome this error.<br>
<br><br></font></font>Suryanarayana Seera,<br>JRF,<br>India.<br> <br>