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On 12/06/2012 3:18 PM, tarak karmakar wrote:
<blockquote
cite="mid:CAGZMOotQ=kNQ9DpCW4qnZmEkC21cbST-4A7FaWjhUkhGeMDn3g@mail.gmail.com"
type="cite">Dear All , <br>
<br>
I am facing problem in matching the coordinates number in this two
files, em.gro and toplogy.top.<br>
I have tried with changing the number of solvents, adding ions
(Na+) ....but in vain <br>
<br>
<u>Note :: My system has ' -1.00 ' charge .......so I have added
one Sodium ion</u><br>
<br>
So can anyone please get me out of this trouble ???<br>
<br style="color:rgb(255,0,0)">
<span style="color:rgb(255,0,0)">Fatal error:</span><br
style="color:rgb(255,0,0)">
<span style="color:rgb(255,0,0)">number of coordinates in
coordinate file (em.gro, 64506)</span><br
style="color:rgb(255,0,0)">
<span style="color:rgb(255,0,0)"> does not match
topology (toplogy.top, 64504)</span><br clear="all">
<br>
</blockquote>
<br>
Probably you didn't use genion properly, but unless you show us your
command lines and [molecule] section, we can't help.<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:CAGZMOotQ=kNQ9DpCW4qnZmEkC21cbST-4A7FaWjhUkhGeMDn3g@mail.gmail.com"
type="cite">-- <br>
<font size="4"><i style="font-family:times new roman,serif"><b>Tarak
Karmakar<br>
Molecular Simulation Lab.<br>
Chemistry and Physics of Materials Unit<br>
Jawaharlal Nehru Centre for Advanced Scientific Research <br>
Jakkur P. O. <br>
Bangalore - 560 064<br>
Karnataka, INDIA<br>
Ph. (lab) : +91-80-22082809 </b></i></font><br>
<br>
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<br>
</blockquote>
<br>
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