<html><head></head><body><div style="font-family: Verdana;font-size: 12.0px;"><div>did you center everything, or are you just looking at it in VMD?
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<div style="margin:0 0 10px 0;"><b>Gesendet:</b> Montag, 08. September 2014 um 18:30 Uhr<br/>
<b>Von:</b> "Mahboobeh Eslami" <mahboobeh.eslami@yahoo.com><br/>
<b>An:</b> "gmx-users@gromacs.org" <gmx-users@gromacs.org><br/>
<b>Betreff:</b> [gmx-users] protein-ligand complex by gromacs</div>
<div name="quoted-content">hi GMX users<br/>
<br/>
<br/>
i have simulated the protein-ligand complex by gromacs. I've repeated the simulation twice but i have get very different results. in one of the simulations ligand separated from protein and stayed in the center of box.<br/>
I've checked all of the input files and the steps , but I did not understand why this happened.<br/>
Please help me .<br/>
Thank you for your kindness<br/>
--<br/>
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