<p style="border:0; padding:0; margin:0; font-family:'Gulim'; font-size:10pt; cursor: text;"><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;">Dear all, </p><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;"><br></p><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;">I have recently posted a question on how generate data that allows me to plot a droplet profile as a function of z-direction.</p><p style="border: 0px; padding: 0px; margin: 0px; cursor: text;">https://www.mail-archive.com/gromacs.org_gmx-users@maillist.sys.kth.se/msg08966.html</p><h4 class="text" style="font-family: 굴림, gulim, 돋움, dotum, AppleGothic; font-size: 14px; margin: 0px; padding: 0px 0px 0px 20px; white-space: nowrap; line-height: 20px; background-color: rgb(255, 255, 255);"><br></h4><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;">Knowing that this procedure requires the use of g_select, I am able to look up some old posts on gmx-users mail list, however, typing g_select -select 'help position' and g_select -select 'help all' simply won't work (single quotation used instead of double quatation). <span style="font-size: 10pt;">I have tried these commands on GROMACS (5.0 single and 5.0.1 double precision).</span></p><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;"><br></p><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;"><br></p><p style="font-family: Gulim; font-size: 10pt; border: 0px; padding: 0px; margin: 0px; cursor: text;">Also, I have another specific question on binning my water droplet along the z-direction:</p><pre style="color: rgb(51, 51, 51); font-size: 12px; background-color: rgb(255, 255, 255);"><font face="Gulim">Firstly, I am only able to use g_select to define the bottom bin for water droplet; could you please advise on indexing the bins from the bottom water layer?
g_select_mpi -f traj_comp.xtc -s topol.tpr -n system.ndx -b 9000 -e 10000 -select 'resname SOL and res_com z < 10' -on output-system.ndx
How does one select SOL between z > 10 and z < 15, so on and so forth?</font></pre><pre style="color: rgb(51, 51, 51); font-size: 12px; background-color: rgb(255, 255, 255);"><br></pre><pre style="color: rgb(51, 51, 51); font-size: 12px; background-color: rgb(255, 255, 255);">Happy New Year, </pre><pre style="color: rgb(51, 51, 51); font-size: 12px; background-color: rgb(255, 255, 255);">Kester</pre></p>
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