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<div>Dear all,</div>
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<div>Is there a possibility to plot the intramolecular energy terms?</div>
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<div>3. of "Diagnosing an Unstable System" of the page</div>
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<div><a href="http://www.gromacs.org/Documentation/Terminology/Blowing_Up" target="_blank">http://www.gromacs.org/Documentation/Terminology/Blowing_Up</a></div>
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<div>sounds as if this is possible. Gmx energy only shows the non bonded interaction energys of the energy groups but not of the energy terms like</div>
<div>angle or dihedrals....</div>
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<div>I found the Dihedral PCA part</div>
<div>http://www.gromacs.org/Documentation/How-tos/Dihedral_PCA</div>
<div>which enables such a calculation of the energy of the dihedrals.</div>
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<div>But what about the bonds or angles?</div>
<div>Is there also a posiibility to plot those energy terms?</div>
<div>Any idea?</div>
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<div>Tank you very much in advance.</div>
Best,
<div>Liz</div>
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