Traceback (most recent call last): File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1799, in __publishing_context yield resource File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1979, in update_output runner() File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 2574, in runner operation_details(resources) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 2752, in __call__ self._runner(resources) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 2099, in __call__ self.function(**resources) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/commandline.py", line 151, in cli stderr=subprocess.STDOUT, File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 395, in check_output **kwargs).stdout File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 472, in run with Popen(*popenargs, **kwargs) as process: File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 775, in __init__ restore_signals, start_new_session) File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/subprocess.py", line 1436, in _execute_child executable = os.fsencode(executable) File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/os.py", line 809, in fsencode filename = fspath(filename) # Does type-checking of `filename`. TypeError: expected str, bytes or os.PathLike object, not NoneType The above exception was the direct cause of the following exception: Traceback (most recent call last): File "P2_Lysozyme.py", line 92, in main() File "P2_Lysozyme.py", line 85, in main test.run() File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 2236, in run self.__resource_manager.update_output() File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1952, in update_output with self.local_input(i) as input: File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/contextlib.py", line 112, in __enter__ return next(self.gen) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 2021, in local_input kwargs = self._input_edge.sink(node=member) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1693, in sink results[key] = self.resolve(key, node) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1677, in resolve return self.adapters[key](member=member) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1663, in self.adapters[name] = lambda member, source=source: source.result() File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1373, in result self.resource_manager.update_output() File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1979, in update_output runner() File "/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/contextlib.py", line 130, in __exit__ self.gen.throw(type, value, traceback) File "/Users/markopetrovic/Box Sync/Egenstudier/Åk5/P3/Ex-Jobb/StringMethodMaster/masters_venv/lib/python3.7/site-packages/gmxapi/operation.py", line 1803, in __publishing_context raise exceptions.ApiError(message) from e gmxapi.exceptions.ApiError: Uncaught {} while providing output-publishing resources for {}.