[gmx-users] Solid layer

David spoel at xray.bmc.uu.se
Wed Dec 22 22:19:51 CET 2004


On Wed, 2004-12-22 at 17:39 +0000, M.Naser wrote:
> Hi David,
> 
> I have been trying to create a silicon layer. I checked the mail archives
> and found the following solution:
> 
> solution:  (by david)
> 
> start with your one atom in a small box (e.g. 0.2 x 0.2 x 0.2 ) alone.
> then use genconf to generate a layer:
> genconf -f conf -o kkk -nbox 20 20 1
> then run editconf to change your box to the required size (and center
> your layer)
> editconf -f kkk -box 4 4 4 -center 2 2 2 -o lll
> then fill it with water:
> genbox -cp lll -cs spc216 -o mmm
> 
> Could you please tell what programme I suppose to use to start with.
> 
emacs or another text editor. CHekc chpater 5 of the manual
> With best regards,
> 
> Abu
> 
> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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