[gmx-users] DPPC simulations

[Justin A. Lemkul]

Jenny Hsu wrote:
> Dear Justin:
>  
> I try to include lipid.itp into ffgmxnb.itp
> and I also tried to add the different sections [ atomtypes ], [ pairtypes ],
> etc... of the lipid.itp files to ffgmx* files

All you should have to do is copy all the sections of lipid.itp into 
ffgmxnb.itp, with the exception of the [ dihedraltypes ], which goes in 
ffgmxbon.itp.  I'm not clear what exactly you've done based on your description.

-Justin

> but when i run grompp, i got another fetal error
> "Atomtype 'C' not found"
>  
> Jenny
>  
>  
> 2008/11/25 Justin A. Lemkul <jalemkul at vt.edu <mailto:jalemkul at vt.edu>>
> 
> 
> 
>     Jenny Hsu wrote:
> 
>         Hi all
>          when i run grompp
>         but it gives "Atomtype LC3 not found"
>          Could anyone explain me briefly?
>          
> 
> 
>     There's lots of information about this type of error in the list
>     archives. Take, for example:
> 
>     http://www.gromacs.org/pipermail/gmx-users/2004-August/011867.html
> 
>     -Justin
> 
>         Jenny Hsu
>         --------------------------------------------------
>         Jenny Hsu, Biotechnology Dept.,
>         Ming Chuan University, Taiwan, R.O.C
> 
> 
>         ------------------------------------------------------------------------
> 
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> 
>     -- 
>     ========================================
> 
>     Justin A. Lemkul
>     Graduate Research Assistant
>     Department of Biochemistry
>     Virginia Tech
>     Blacksburg, VA
>     jalemkul[at]vt.edu <http://vt.edu/> | (540) 231-9080
>     http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> 
>     ========================================
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> 
> 
> 
> -- 
> Jenny Hsu, Biotechnology Dept.,
> Ming Chuan University, Taiwan, R.O.C

-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================