[gmx-users] DSSP => how to edit .eps file

[Justin A. Lemkul]

Chih-Ying Lin wrote:
> 
> 
> HI 
> After running DSSP, .eps files are created.

No they aren't; you create .eps files from the .xpm output that do_dssp generates.

> We can see the second structures of the all residues.
> I only want to see the change of the second structures of some specific 
> residues.
> How can i do it?
> 

As with most (all) Gromacs analysis tools, create an index group for the 
residues you want to analyze.  That will require you to re-run your analysis or 
otherwise hack your .xpm file (probably not a good idea).

> Also, how can I change the thickness of the color band for each residue?

Use an appropriate .m2p file to alter the attributes of the data.  An example is 
given in the online manual.

> The logo indicates the color of different second structure is shown not 
> clear for me, how can i make the change on it?
> 

Do you want to change the colors assigned, or some other aspect of the legend? 
You could, in theory, edit the color assignments in the .xpm file.

-Justin

> Thank you
> Lin
>  
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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