[gmx-users] enegry minimisation

[sonali dhindwal]

hello Jusitn,
Thanks for your reply,,
I am sending you the link,
so that you can see the changes in the protein, I have specifically
shown that part of the protein, where I am seeing changes,

http://picasaweb.google.co.in/sonali11dhindwal/Protein?feat=directlink


Yello
beeta sheets are of the protein after EM, and magenta are that of the
refrence structure, you can see how this time,I am surprised myself
that sheets have become longer than the refrence structure.
I have corrected that       define      =  -DPOSRES also.
and have taken that posres file generated by pdb2gmx.is this the problem of the visualiser I m using, I am using pymol for it
Thanks

--
Sonali Dhindwal

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