[gmx-users] Re: trjconv

[mohsen ramezanpour]

of course I could generate a pdb file without -b and -e options,but I don't
want it.

besides I did the same process with xtc file and I resulted in a 0 byte file
:(


On Mon, Nov 8, 2010 at 11:21 AM, mohsen ramezanpour <
ramezanpour.mohsen at gmail.com> wrote:

> Dear justin
>
> I checked what you said,yes,both of them(trr and xtc files) were completely
> done as I wanted in my mdp file.
>
> what is your points of view?
>
>
> On Sun, Nov 7, 2010 at 9:15 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>>
>>
>> Vitaly Chaban wrote:
>>
>>> Did you try to re-run your trajectory? Does the problem persist then?
>>>
>>>
>>>
>> Perhaps the faster solution would be to see what gmxcheck says about the
>> trajectory.
>>
>> -Justin
>>
>>
>>
>>>  I have a trajectory with 20000 frames.
>>>> i want to separate just 1000 last frames of it in pdb formt and 1000
>>>> first
>>>> frames too.
>>>> I entered this command:
>>>> trjconv  -f  mmm.trr  -o nnn.pdb -s  lll.tpr  -b 800  -e 1000
>>>>
>>>> actually my total time is 1000 ps.
>>>> the process was  not  done completely!
>>>> when I delete -e option it is done completely but the the result file is
>>>> 0
>>>> byte,then i can not earn anything.
>>>> what is the problem?
>>>>
>>>> thanks in advance for your comments
>>>> Mohsen
>>>>
>>>
>> --
>> ========================================
>>
>> Justin A. Lemkul
>> Ph.D. Candidate
>> ICTAS Doctoral Scholar
>> MILES-IGERT Trainee
>> Department of Biochemistry
>> Virginia Tech
>> Blacksburg, VA
>> jalemkul[at]vt.edu | (540) 231-9080
>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>
>> ========================================
>>
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>
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