[gmx-users] clusterization in dihedral space

[Justin Lemkul]

On 1/21/13 1:54 PM, francesco oteri wrote:
> Dear gromacs users,
> I am trying to run dihedral space clustering with g_dih,
> but I found that it gives me a lot of error like:
> Dihedral around 24,26 not found in topology. Using mult=3
>
> Looking on the net, I found something alarming: g_dih is gromos specific!
> http://lists.gromacs.org/pipermail/gmx-users/2006-August/023230.html
>
> It is still true?
>

Yes, and it is for this reason that g_dih has been removed from Gromacs.  You 
can likely accomplish whatever you're trying to do with g_angle.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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