[gmx-users] GMX 2018 regression tests: cufftPlanMany R2C plan failure (error code 5)

Alex nedomacho at gmail.com
Thu Feb 8 14:14:44 CET 2018


Mark and Peter,

Thanks for commenting. I was told that all CUDA tests passed, but I will 
double check on how many of those were actually run. Also, we never 
rebooted the box after CUDA install, and finally we had a bunch of 
gromacs (2016.4) jobs running, because we didn't want to interrupt 
postdoc's work... All of those were with -nb cpu though. Could those 
factors have affected our regression tests?

It will really suck, if these are hardware-related...

Thanks,

Alex


On 2/8/2018 3:03 AM, Mark Abraham wrote:
> Hi,
>
> Or leftovers of the drivers that are now mismatching. That has caused
> timeouts for us.
>
> Mark
>
> On Thu, Feb 8, 2018 at 10:55 AM Peter Kroon <p.c.kroon at rug.nl> wrote:
>
>> Hi,
>>
>>
>> with changing failures like this I would start to suspect the hardware
>> as well. Mark's suggestion of looking at simpler test programs than GMX
>> is a good one :)
>>
>>
>> Peter
>>
>>
>> On 08-02-18 09 <08-02%2018%2009>:10, Mark Abraham wrote:
>>> Hi,
>>>
>>> That suggests that your new CUDA installation is differently incomplete.
>> Do
>>> its samples or test programs run?
>>>
>>> Mark
>>>
>>> On Thu, Feb 8, 2018 at 1:20 AM Alex <nedomacho at gmail.com> wrote:
>>>
>>>> Update: we seem to have had a hiccup with an orphan CUDA install and
>> that
>>>> was causing issues. After wiping everything off and rebuilding the
>> errors
>>>> from the initial post disappeared. However, two tests failed during
>>>> regression:
>>>>
>>>> 95% tests passed, 2 tests failed out of 39
>>>>
>>>> Label Time Summary:
>>>> GTest              = 170.83 sec (33 tests)
>>>> IntegrationTest    = 125.00 sec (3 tests)
>>>> MpiTest            =   4.90 sec (3 tests)
>>>> UnitTest           =  45.83 sec (30 tests)
>>>>
>>>> Total Test time (real) = 1225.65 sec
>>>>
>>>> The following tests FAILED:
>>>>    9 - GpuUtilsUnitTests (Timeout)
>>>> 32 - MdrunTests (Timeout)
>>>> Errors while running CTest
>>>> CMakeFiles/run-ctest-nophys.dir/build.make:57: recipe for target
>>>> 'CMakeFiles/run-ctest-nophys' failed
>>>> make[3]: *** [CMakeFiles/run-ctest-nophys] Error 8
>>>> CMakeFiles/Makefile2:1160: recipe for target
>>>> 'CMakeFiles/run-ctest-nophys.dir/all' failed
>>>> make[2]: *** [CMakeFiles/run-ctest-nophys.dir/all] Error 2
>>>> CMakeFiles/Makefile2:971: recipe for target 'CMakeFiles/check.dir/rule'
>>>> failed
>>>> make[1]: *** [CMakeFiles/check.dir/rule] Error 2
>>>> Makefile:546: recipe for target 'check' failed
>>>> make: *** [check] Error 2
>>>>
>>>> Any ideas? I can post the complete log, if needed.
>>>>
>>>> Thank you,
>>>>
>>>> Alex
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